PTM Viewer PTM Viewer

AT5G42950.1

Arabidopsis thaliana [ath]

GYF domain-containing protein

97 PTM sites : 8 PTM types

PLAZA: AT5G42950
Gene Family: HOM05D003992
Other Names: NULL
Uniprot
Q9FMM3

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nt A 2 ANSSAGSAADHR89b
89c
nta A 2 ANSSAGSAADHRNKHL167a
ANSSAGSAADHR80
89b
89c
ph S 4 ANSSAGSAADHR88
114
fuc S 5 MANSSAGSAADHR162
ph S 5 ANSSAGSAADHR88
114
ph S 18 HLSVNPPHQIFK114
ph S 39 DIQGSDNAIPLSPQWLLSKPGENK18a
35
38
48
60
83
85
94
97
109
111a
111b
111c
111d
114
ph S 45 DIQGSDNAIPLSPQWLLSKPGENK83
ph Y 62 TGMGTGDPNQYGNHSDVVR63
ph S 66 TGMGTGDPNQYGNHSDVVR114
ph T 78 TTGNGEETLDNLK114
ph S 91 DVFRPSLLDAESGRR114
ph S 97 DVFRPSLLDAESGRR114
ph S 113 DTLSSVRNDR114
ph S 156 WTDSGNKDAAPEQR114
ub K 202 EKGPSLPTSDGDHYR40
ph S 241 QVTSFSHSR114
ph S 243 QVTSFSHSR114
ph S 245 QVTSFSHSR114
me2 R 248 GRGENTAIFSAGRGR123
me2 R 259 GRGENTAIFSAGRGR123
ph S 263 MSPGGSIFTSAPNQSHPPGSASDKGESGPGEPPHLR114
MSPGGSIFTSAPNQSHPPGSASDK100
ph S 267 MSPGGSIFTSAPNQSHPPGSASDKGESGPGEPPHLR114
ub K 302 MKLLDVYR40
ph S 380 NPVEFSQPRR114
ph S 390 IRPAGSREDMTFGAEESKDESGETR18a
38
44
48
83
88
100
PAGSREDMTFGAEESKDESGETR88
RIRPAGSREDMTFGAEESK100
IRPAGSREDMTFGAEESK83
88
100
109
114
ph S 401 IRPAGSREDMTFGAEESKDESGETR48
ub K 402 EDMTFGAEESKDESGETR40
ph S 421 FRPEASHEGYAPFR114
ph S 452 ELKEPSMQGNAHVQSASPWR114
ph S 454 ELKEPSMQGNAHVQSASPWR114
ph S 465 SNRNSHDWNDPSADSR114
ph S 469 SNRNSHDWNDPSADSR88
100
109
114
fuc S 479 SNRNSHDWNDPSADSRLK162
ph S 486 SSDSVWSHPK114
og S 508 SSDSVWSHPKDSINHLGGNNMMLPQSK81
DSINHLGGNNMMLPQSKGESR81
DSINHLGGNNMMLPQSK81
ph S 508 DSINHLGGNNMMLPQSKGESR114
ph S 521 WQISEDPSLR114
ph S 527 RQPSLVFDREQEVR18a
46
48
83
85
100
109
114
RQPSLVFDR28
60
83
84b
85
88
100
QPSLVFDR88
ph S 543 LLPSSPEELSLYYK114
ac K 606 AKSGPPPGFTGAK101
ph S 638 VHSGMGETDMLQNDMR114
nt Y 652 YKHVAGTVAENR167b
og T 658 YKHVAGTVAENR81
HVAGTVAENR81
ph S 716 QRSIPSPYSYWPGR83
114
SIPSPYSYWPGR38
60
83
109
ph S 719 QRSIPSPYSYWPGR83
100
SIPSPYSYWPGR114
ph S 749 SPSSDLLSILQGVTDR44
66
ph S 751 SPSSDLLSILQGVTDR61a
66
85
106
111a
111b
111c
111d
114
ph S 752 SPSSDLLSILQGVTDR111a
111b
111c
111d
og S 770 SSPAVSGPLPAWSQPIQKESDLHHAK81
SSPAVSGPLPAWSQPIQK81
og S 777 SSPAVSGPLPAWSQPIQKESDLHHAK81
SSPAVSGPLPAWSQPIQK81
og T 791 ESDLHHAKTFQTQIPFGVQQQR81
og S 932 LQPSKDMSQVNQQVQVPVSHEER81
og S 947 LQPSKDMSQVNQQVQVPVSHEER81
DMSQVNQQVQVPVSHEER81
ph T 1087 GEVSIELSGETPATEVK114
ub K 1102 KTSEKKSR40
ub K 1114 AKQAADLAKSTSR40
ub K 1121 AKQAADLAKSTSR40
ph S 1124 STSRAPLQETK88
114
ph S 1138 KPQPGSADDSEIKGK85
114
KPQPGSADDSEIK85
88
100
ph S 1151 KSADTLIDNDTHLIK109
SADTLIDNDTHLIK59
85
88
100
114
136
ph S 1182 SSTATASNTSQMSSEVDSVRGEESSLQNTR114
ph S 1188 GEESSLQNTR114
ph S 1211 SLLEIQMEEQR114
ph S 1264 ETHGESAITQTGVVKPESVPTLK114
ph S 1276 ETHGESAITQTGVVKPESVPTLK114
ph S 1285 SHLHDLLADDVFAK83
84b
100
114
ph S 1365 IAAHVPAVDTSLQTNSVEK114
ph T 1368 IAAHVPAVDTSLQTNSVEK114
ph S 1370 IAAHVPAVDTSLQTNSVEK44
100
114
ph S 1407 GESVNNPPPAAAWSSGPK114
ph S 1429 STKPSSLRDIVK114
ph T 1442 MTTSSHPPPSPVPTTQK114
ph S 1444 MTTSSHPPPSPVPTTQK100
ph S 1449 MTTSSHPPPSPVPTTQK44
88
100
109
114
ph T 1453 MTTSSHPPPSPVPTTQK114
ph S 1468 AIPPQAHQGGASWSR114
fuc S 1470 AIPPQAHQGGASWSR162
og S 1470 AIPPQAHQGGASWSR81
ph S 1472 SASSPSQAVSQSSSQSK44
100
fuc S 1474 SASSPSQAVSQSSSQSK162
ph S 1474 SASSPSQAVSQSSSQSK44
97
106
114
ph S 1475 SASSPSQAVSQSSSQSK88
114
ph S 1477 SASSPSQAVSQSSSQSK106
ph S 1489 SKGDDDLFWGPVEQSTQDTK114
ph S 1517 QGDFPHLTSQNSWGTK61a
83
100
ph S 1520 QGDFPHLTSQNSWGTK59
83
84b
85
88
109
114
ph T 1526 NTPGKVNAGTSLNR114
fuc T 1534 VNAGTSLNR162
ph S 1535 VNAGTSLNR114
ph S 1541 SVSMGSADRVLSSPVVTQASHK94
QKSVSMGSADR88
114
SVSMGSADR88
100
109
ph S 1543 QKSVSMGSADR88
SVSMGSADR114
ph S 1546 SVSMGSADR114
ph S 1552 VLSSPVVTQASHK114
ph S 1553 VLSSPVVTQASHK44
88
114
ph T 1557 VLSSPVVTQASHK114
ph S 1560 VLSSPVVTQASHK88
114

Sequence

Length: 1714

MANSSAGSAADHRNKHLSVNPPHQIFKDIQGSDNAIPLSPQWLLSKPGENKTGMGTGDPNQYGNHSDVVRTTGNGEETLDNLKKKDVFRPSLLDAESGRRDRWRDEERDTLSSVRNDRWRNGDKDSGDNKKVDRWDNVAPKFGEQRRGPNDRWTDSGNKDAAPEQRRESKWNSRWGPDDKEAEIPRNKWDEPGKDGEIIREKGPSLPTSDGDHYRPWRPSQGRGRGEALHNQSTPNKQVTSFSHSRGRGENTAIFSAGRGRMSPGGSIFTSAPNQSHPPGSASDKGESGPGEPPHLRYSRMKLLDVYRMADTECYEKFPDGFIEVPSLTSEEPTDPLALCAPSSDEVNVLDAIEKGKIVSSGAPQTSKDGPTGRNPVEFSQPRRIRPAGSREDMTFGAEESKDESGETRNYPDDKFRPEASHEGYAPFRRGNEAPVRELKEPSMQGNAHVQSASPWRQSSGGERSNRNSHDWNDPSADSRLKSSDSVWSHPKDSINHLGGNNMMLPQSKGESRWQISEDPSLRRQPSLVFDREQEVRKLLPSSPEELSLYYKDPQGLIQGPFSGSDIIGWFEAGYFGIDLLVRLASAPNDSPFSLLGDVMPHLRAKSGPPPGFTGAKQNEFVDAAGTSAFPGVGKVHSGMGETDMLQNDMRYKHVAGTVAENRFIESLMSGGLTNSAQGVQGYGVNSSGGLSLPVTDGGADMYLLAKKLELERQRSIPSPYSYWPGRESANLMPGSENVSENAQQPTRSPSSDLLSILQGVTDRSSPAVSGPLPAWSQPIQKESDLHHAKTFQTQIPFGVQQQRLPEQNLPLSGLLGQPMENNPGGMLSPDMMLAAGLSQEHQSLNLLQQQQLLLQLNAQTPLSAQHQRLLVEKMLLLKHQHKQEEQQQLLRQQQQLYSQVFADQQRSQQRFGDPSYGQLQASLDALRLQPSKDMSQVNQQVQVPVSHEERGINLADLLPVTHATNQTVASFETPSLHLQNQLFGNVDPRMVLPDQIDDTHKKESKSEYERTVSADYVNSLYSEKPVLSPGYHATHNVEEPVSYPNNESSTATMTAPEIVESKLLEEQSKDMYAGKGEVSIELSGETPATEVKNNDVSVARKTSEKKSRKQRAKQAADLAKSTSRAPLQETKKPQPGSADDSEIKGKTKKSADTLIDNDTHLIKSSTATASNTSQMSSEVDSVRGEESSLQNTRTQPGRAWKPAPGFKPKSLLEIQMEEQRVAQAEALAPKISSTVNSVGSAAPWAGIVTNSDSNILRETHGESAITQTGVVKPESVPTLKAKKSHLHDLLADDVFAKSSDKEREVMEIISNNDAFMQVTTTNAESFDDDNFIDARETKKSRKKSARAKTSGAKIAAHVPAVDTSLQTNSVEKGKSSRILQQQEKEVLPAIPSGPSLGDFVLWKGESVNNPPPAAAWSSGPKKSTKPSSLRDIVKEQEKMTTSSHPPPSPVPTTQKAIPPQAHQGGASWSRSASSPSQAVSQSSSQSKSKGDDDLFWGPVEQSTQDTKQGDFPHLTSQNSWGTKNTPGKVNAGTSLNRQKSVSMGSADRVLSSPVVTQASHKGKKEAVTKLTEANGFRDWCKSECLRLLGSEDTSVLEFCLKLSRSEAETLLIENLGSRDPDHKFIDKFLNYKDLLPSEVVEIAFQSKGSGVGTRNNTGEDYYYNTTAANDGFSKVGGKKKAKKGKKVSLSASVLGFNVVSNRIMMGEIQTIED

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
ph Phosphorylation X
fuc O-Fucosylation X
ub Ubiquitination X
me2 Dimethylation X
og O-GlcNAcylation X
ac Acetylation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR003169 546 603

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here